Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs1739818 | chr1:16322585 | T/C | 1.97E-6 | 176 | 3.43 | 15.53 | 15.5 | KM Plot |
| PAAD | rs1739819 | chr1:16323313 | C/T | 1.97E-6 | 176 | 3.43 | 15.53 | 15.5 | KM Plot |
| PAAD | rs1739823 | chr1:16325048 | A/G | 1.97E-6 | 176 | 3.43 | 15.53 | 15.5 | KM Plot |
| PAAD | rs1739825 | chr1:16326113 | C/T | 1.97E-6 | 176 | 3.43 | 15.53 | 15.5 | KM Plot |
| PAAD | rs1739826 | chr1:16326175 | C/T | 1.97E-6 | 176 | 3.43 | 15.53 | 15.5 | KM Plot |
| PAAD | rs17406477 | chr4:78456502 | C/T | 2.53E-5 | 178 | 15.57 | 14.63 | 3.9 | KM Plot |
| PAAD | rs17408679 | chr1:200526109 | T/C | 0 | 170 | 15.23 | 16.13 | 1.03 | KM Plot |
| PAAD | rs17409765 | chr2:146086607 | T/G | 9.29E-8 | 178 | 15.67 | 14.18 | 3.17 | KM Plot |
| PAAD | rs17418125 | chr2:128504621 | G/C | 7.9E-10 | 178 | 15.62 | 12.6 | 2.2 | KM Plot |
| PAAD | rs17465 | chr17:40308734 | C/T | 8.84E-5 | 177 | 15.57 | 13.8 | 4 | KM Plot |
| PAAD | rs17491503 | chr17:39305257 | A/C | 3.1E-6 | 178 | 15.72 | 14 | 5.1 | KM Plot |
| PAAD | rs17495860 | chr7:6227166 | T/C | 0 | 171 | 15.47 | 15.5 | 1.03 | KM Plot |
| PAAD | rs17534053 | chr2:128520262 | T/C | 7.9E-10 | 178 | 15.62 | 12.6 | 2.2 | KM Plot |
| PAAD | rs17551264 | chr17:12871430 | A/G | 0.000106 | 175 | 16.13 | 11.13 | 7.97 | KM Plot |
| PAAD | rs17551884 | chr17:40307799 | T/C | 8.84E-5 | 177 | 15.57 | 13.8 | 4 | KM Plot |